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abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

adventofcode2021

personal advent of code participation

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-cto

A curated and opinionated list of resources for Chief Technology Officers, with the emphasis on startups

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bore

🕳 bore is a simple CLI tool for making tunnels to localhost

c3poa

Computational pipeline for calling consensi on R2C2 nanopore data

containers

Bioinformatics containers

cyclomics_consensus_pipeline

Cyclomics consensus pipeline based on LAST and dagcon

cyclomicsmanuscript

Data analysis scripts used to process and plot the data for the manuscript of CyclomicsSeq.

django-audio-recorder

epi2melabs-test

epi2melabs-test2

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gobridget

htmx

</> htmx - high power tools for HTML

medium-editor

Medium.com WYSIWYG editor clone. Uses contenteditable API to implement a rich text solution.

mindd_get

python script to interact with the mindd API

minion_qc

Quality control for MinION sequencing data

nf-dashboard-dj

Django web dashboard and API for Nextflow

nf-recursion

Showcase repository for Nextflow recursion

pomoxis

Analysis components from Oxford Nanopore Research

pueue

:stars: Manage your shell commands.

python-blueprint

:snake: Example Python project using best practices :nut_and_bolt:

pyvcf

A Variant Call Format reader for Python.

react-page

Next-gen, highly customizable content editor for the browser - based on React and Redux and written in TypeScript. WYSIWYG on steroids.

reaction_diffusion

targeted-phasing-consensus

tiny-test-data

Super small biological datasets for unit testing

upsetplot

Draw UpSet plots with Matplotlib