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admin-training

Galaxy Admin Training

anti-hiv_predictor

Development of new, effective and affordable drugs against HIV is urgently needed. In this project, we developed a method called Anti-HIV-Predictor for predicting the anti-HIV activity of given compounds. This method is rapid and accurate (accuracy >93% and AUC > 0.958).

anti-sars-cov-2

The code and associated dataset for the study of “In silico identification of anti-SARS-CoV-2 medicinal plants using cheminformatics and machine learning”

awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

bioalerts

Derivation of structural alerts from bioactivity data sets

chemical_vae

Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow

chemogenomic-dti-prediction-methods

Algorithms for prediction of drug-target interactions via computational (chemogenomic) methods

compms2miner

metabolite identification R-package for metabolomic high-resolution LC-MS datasets.

cytotoxicity

cytotoxicity prediction

daishaoxing.github.io

Home page of daishaoxing

deep-belief-network

A Python implementation of Deep Belief Networks built upon NumPy and TensorFlow with scikit-learn compatibility

deep-learning-tensorflow

Ready to use implementations of various Deep Learning algorithms using TensorFlow.

deepalign

DeepAlign: the protein structure analysis toolkit

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

fastq-tools

gene_lists

List of gene lists for genomic analyses.

genome-analysis

Genome analysis pipeline that follows GATK best practices from Broad Institute

handbook_of_biostatistic_r

handbook of biostatistic and R

hnrnpa2b1

Data analysis code for the study of hnRNPA2B1, is a novel drug target for HBV infection.

iplant-bwa-mem-parallel

A wrapper for increasing scaling of BWA.

is_mapper

IS mapping software

kegg-animate-pathway

Command-line utility to color objects of a KEGG pathway with arbitrary colors

keras_extensions

A collection of small extensions to Keras (RBM, momentum schedule, ..)

lsc

Large-scale comparison of machine learning methods for drug target prediction on ChEMBL

metaboanalystr

R package for MetaboAnalyst

metabolomics_pipeline

Pipeline to process UPLC-MS/MS data with XCMS

metabolomicstools

metmsline_scripts

R scripts for automation of Metabolomic data analysis