Comments (6)
Dear users, Could you kindly confirm that none of the arguments of get.exp.stat contain NA value? Thanks.
…
On Mon, Jul 24, 2023 at 8:35 PM skim245 @.> wrote: @wlei-amu https://github.com/wlei-amu i'm having the same issue. did you resolve this issue? — Reply to this email directly, view it on GitHub <#50 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB4NHS63ZN4O44F5HS4WY2TXR4IFPANCNFSM6AAAAAA2P6E5BQ . You are receiving this because you are subscribed to this thread.Message ID: @.>
Thank you for your reply. I finally figured out what the problem was, because I set cell.type.labels and cell.state.labels as factor. After I set them as character, then it worked well.
from bayesprism.
@wlei-amu i'm having the same issue. did you resolve this issue?
from bayesprism.
from bayesprism.
@wlei-amu i'm having the same issue. did you resolve this issue?
Please set cell.type.labels and cell.state.labels as character, then it worked well.
from bayesprism.
@wlei-amu great! it works for me now too !
from bayesprism.
from bayesprism.
Related Issues (20)
- imput of Bulk RNA-seq have negative after romoving batch effect HOT 1
- Can BayesPrism be used to deconvolute normal and disease muscle tissues to different cell types? HOT 2
- library size normalization of inferred counts? HOT 1
- installation error
- optimal number of each cell state HOT 3
- reference single cell HOT 1
- cell type correlation in the reference
- Final Theta of cell state HOT 3
- I just want to quantify the various cell types within T cells, is this feasible? HOT 1
- How much memory consumed per core? HOT 1
- Example about Computing z-scores of signature genes for Z of the cell type of interest. HOT 3
- Discrepancies Between matched Single-cell and Bulk Transcriptome Samples HOT 1
- gene names of reference and mixture do not match! HOT 1
- Deconvolution Using BayesPrism for Tumor Subtypes HOT 2
- Mouse or human (?) for option "species" HOT 1
- Using known cell type fractions HOT 2
- Using selected cell type markers can't improve the accuracy
- Question and suggestion for running with large bulk sample set HOT 1
- why cell type specific gene expression inference is so much better for cancer cells than for the rest ? HOT 1
- Re-input the result into the seurat object HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bayesprism.