One more TFBS database (HOCOMOCO) about rtfbs_db

[ttriche]

or just import it from motifbreakR:
https://www.bioconductor.org/packages/release/bioc/vignettes/motifbreakR/inst/doc/motifbreakR-vignette.html#fn3

--t

On Sat, Feb 6, 2016 at 3:51 PM, Ilya Vorontsov [email protected]
wrote:

Hello
Please consider inclusion of motifs from the biggest and very well
performing human&mouse motif database Hocomoco-10 (
http://hocomocoautosomeru/) It contains motifs for 601 human TFs (and
where possible these motifs are non-redundant)
On downloads page (http://hocomocoautosomeru/downloads) you can get
motifs in several formats
Hope you will find our database interesting and useful for your project
Best, Ilya

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#2.

[dankoc]

Thanks very much to both of you for the suggestions. Hocomoco looks like quite a useful resource. Based on a quick discussion, I expect we'll incorporate it in the next week or two. We will leave the issue open until we're done.

We appreciate you pointing it out!

Best,
Charles

[VorontsovIE]

Thank you, Charles.
If any questions about HOCOMOCO will rise, don't hesitate to ask me.

Best, Ilya

[wzhy2000]

I just finished new version (v0.3.2), which adds the functions to work with HOCOMOCO format and MotifDb object. Thank you for your comment.