danrlu Goto Github PK
Name: Dan Lu
Type: User
Bio: solar powered
Location: Evanston, IL
Dan Lu's Projects
bactopia.github.io
Bactopia Documentation
bug_report_data
temp toy data for bug report
cegwas2
cegwas2-nf
GWA mapping with C. elegans
centipede.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
covid_ngs_data_sample
covid_tracker_resources
covidtracker_rejected_rescue
czid-workflows
Portable WDL workflows for CZ ID production pipelines
danrlu.github.io
debug_data
fuller_lab_paper
Scripts/tutorial to reproduce data analysis for the genomics paper from the Fuller Lab
genome_prep
download and index genome for alignment and variant calling
monkeypox
Nextstrain build for monkeypox virus
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
nextflow_cheatsheet
Tips for Nextflow and cheatsheet for channel operation
nextflow_training
Code for Nextflow trau
nf_poppunk_ska
nf_qc
Quick QC and trim for raw sequencing reads
ngs_workshop
Made this for very beginners of next-generation sequencing and high performance computing cluster
pp-sketchlib
Library of sketching functions used by PopPUNK
rnaseq_template
test
test2
test3
wi-gatk
The new GATK-based pipeline for wild isolate C. elegans strains
wi-nf
wi-strain-info
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