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affinityprop

Vectorized and Parallelized Affinity Propagation

airflow_tutorial

ansible-role-irods-srv

Repository for ansible role installing and configuring irods (catalogue or resource) servers

bio-panpipe

Bio-PanPipe package for detection of germline and somatic variants

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

darked89.github.io

Serif is a beautiful small business theme for Jekyll.

doc-annovar

Documentation for the ANNOVAR software

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

gene2farm

Gene2Farm Winter School 2013

geneidc

Predict splice sites, exons or genes, in eukaryotic genomic DNA sequences

geneidt

geneid trainer refactor

github-pages-with-jekyll

test site a

gwas2vcf

Convert GWAS summary statistics to VCF

leszek_scripts

My bioinfo toolbox

mop2

Master of Pores 2

music

MUltiScale enrIchment Calling for ChIP-Seq Datasets

needlestack

Multi-sample somatic variant caller

netzcore

Analysis for Guney & Oliva, 2012 & 2014 articles

nexus_perl_scripts

A collection of perl scripts. Mostly used for parsing array-cgh data

panpipe

PanPipe Workflow Manager

penncnv

Copy number vaiation detection from SNP arrays

r-pkgs

Building R packages

sicer2

Implement few fixes for SICER2

test_darked89.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

test_web

training-kit

Open source cheat sheets for Git and GitHub

trna_methyl

map and analyse methylated tRNAs using NGS data

utils_2019

scripts, slurm, singularity