upgrade and import issue about dascore

[d-chambers]

Which version of python? How did you install dascore?

[d-chambers]

The error is coming from PyTables so maybe we need to pin its version, could you also share your conda env (assuming you are using conda)

conda list

[jinwar]

packages in environment at /home/gjin/anaconda3:

Name Version Build Channel

_ipyw_jlab_nb_ext_conf 0.1.0 py39h06a4308_0
_libgcc_mutex 0.1 main
_openmp_mutex 4.5 1_gnu
alabaster 0.7.12 pyhd3eb1b0_0
anaconda 2021.11 py39_0
anaconda-client 1.9.0 py39h06a4308_0
anaconda-navigator 2.1.1 py39_0
anaconda-project 0.10.1 pyhd3eb1b0_0
anyio 2.2.0 py39h06a4308_1
appdirs 1.4.4 pyhd3eb1b0_0
argh 0.26.2 py39h06a4308_0
argon2-cffi 20.1.0 py39h27cfd23_1
arrow 0.13.1 py39h06a4308_0
asn1crypto 1.4.0 py_0
astroid 2.6.6 py39h06a4308_0
astropy 4.3.1 py39h09021b7_0
async_generator 1.10 pyhd3eb1b0_0
atomicwrites 1.4.0 py_0
attrs 21.2.0 pyhd3eb1b0_0
autopep8 1.5.7 pyhd3eb1b0_0
babel 2.9.1 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
backports 1.0 pyhd3eb1b0_2
backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0
backports.shutil_get_terminal_size 1.0.0 pyhd3eb1b0_3
backports.tempfile 1.0 pyhd3eb1b0_1
backports.weakref 1.0.post1 py_1
beautifulsoup4 4.10.0 pyh06a4308_0
binaryornot 0.4.4 pyhd3eb1b0_1
bitarray 2.3.0 py39h7f8727e_1
bkcharts 0.2 py39h06a4308_0
black 19.10b0 py_0
blas 1.0 mkl
bleach 4.0.0 pyhd3eb1b0_0
blosc 1.21.0 h8c45485_0
bokeh 2.4.1 py39h06a4308_0
boto 2.49.0 py39h06a4308_0
bottleneck 1.3.2 py39hdd57654_1
brotli 1.0.9 he6710b0_2
brotlipy 0.7.0 py39h27cfd23_1003
brunsli 0.1 h2531618_0
bzip2 1.0.8 h7b6447c_0
c-ares 1.17.1 h27cfd23_0
ca-certificates 2021.10.26 h06a4308_2
cached-property 1.5.2 py_0
cairo 1.16.0 hf32fb01_1
certifi 2021.10.8 py39h06a4308_0
cffi 1.14.6 py39h400218f_0
cfitsio 3.470 hf0d0db6_6
chardet 4.0.0 py39h06a4308_1003
charls 2.2.0 h2531618_0
charset-normalizer 2.0.4 pyhd3eb1b0_0
click 8.0.3 pyhd3eb1b0_0
cloudpickle 2.0.0 pyhd3eb1b0_0
clyent 1.2.2 py39h06a4308_1
colorama 0.4.4 pyhd3eb1b0_0
conda 4.10.3 py39h06a4308_0
conda-build 3.21.5 py39h06a4308_0
conda-content-trust 0.1.1 pyhd3eb1b0_0
conda-env 2.6.0 1
conda-pack 0.6.0 pyhd3eb1b0_0
conda-package-handling 1.7.3 py39h27cfd23_1
conda-repo-cli 1.0.4 pyhd3eb1b0_0
conda-token 0.3.0 pyhd3eb1b0_0
conda-verify 3.4.2 py_1
contextlib2 0.6.0.post1 pyhd3eb1b0_0
cookiecutter 1.7.2 pyhd3eb1b0_0
cryptography 3.4.8 py39hd23ed53_0
curl 7.78.0 h1ccaba5_0
cycler 0.10.0 py39h06a4308_0
cython 0.29.24 py39hdbfa776_0
cytoolz 0.11.0 py39h27cfd23_0
daal4py 2021.3.0 py39hae6d005_0
dal 2021.3.0 h06a4308_557
dascore 0.0.12 pypi_0 pypi
dask 2021.10.0 pyhd3eb1b0_0
dask-core 2021.10.0 pyhd3eb1b0_0
dataclasses 0.8 pyh6d0b6a4_7
dbus 1.13.18 hb2f20db_0
debugpy 1.4.1 py39h295c915_0
decorator 5.1.0 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 pyhd3eb1b0_0
distributed 2021.10.0 py39h06a4308_0
docutils 0.17.1 py39h06a4308_1
entrypoints 0.3 py39h06a4308_0
et_xmlfile 1.1.0 py39h06a4308_0
expat 2.4.1 h2531618_2
fastcache 1.1.0 py39he8ac12f_0
filelock 3.3.1 pyhd3eb1b0_1
findiff 0.10.0 pypi_0 pypi
flake8 3.9.2 pyhd3eb1b0_0
flask 1.1.2 pyhd3eb1b0_0
fontconfig 2.13.1 h6c09931_0
fonttools 4.25.0 pyhd3eb1b0_0
freetype 2.10.4 h5ab3b9f_0
fribidi 1.0.10 h7b6447c_0
fsspec 2021.8.1 pyhd3eb1b0_0
future 0.18.2 py39h06a4308_1
gdown 4.6.0 pypi_0 pypi
get_terminal_size 1.0.0 haa9412d_0
gevent 21.8.0 py39h7f8727e_1
giflib 5.2.1 h7b6447c_0
glib 2.69.1 h5202010_0
glob2 0.7 pyhd3eb1b0_0
gmp 6.2.1 h2531618_2
gmpy2 2.0.8 py39h8083e48_3
graphite2 1.3.14 h23475e2_0
greenlet 1.1.1 py39h295c915_0
gst-plugins-base 1.14.0 h8213a91_2
gstreamer 1.14.0 h28cd5cc_2
h5py 3.3.0 py39h930cdd6_0
harfbuzz 2.8.1 h6f93f22_0
hdf5 1.10.6 hb1b8bf9_0
heapdict 1.0.1 pyhd3eb1b0_0
html5lib 1.1 pyhd3eb1b0_0
icu 58.2 he6710b0_3
idna 3.2 pyhd3eb1b0_0
imagecodecs 2021.8.26 py39h4cda21f_0
imageio 2.9.0 pyhd3eb1b0_0
imagesize 1.2.0 pyhd3eb1b0_0
importlib-metadata 4.8.1 py39h06a4308_0
importlib_metadata 4.8.1 hd3eb1b0_0
inflection 0.5.1 py39h06a4308_0
iniconfig 1.1.1 pyhd3eb1b0_0
intel-openmp 2021.4.0 h06a4308_3561
intervaltree 3.1.0 pyhd3eb1b0_0
ipykernel 6.4.1 py39h06a4308_1
ipython 7.29.0 py39hb070fc8_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.5 pyhd3eb1b0_1
isort 5.9.3 pyhd3eb1b0_0
itsdangerous 2.0.1 pyhd3eb1b0_0
jbig 2.1 hdba287a_0
jdcal 1.4.1 pyhd3eb1b0_0
jedi 0.18.0 py39h06a4308_1
jeepney 0.7.1 pyhd3eb1b0_0
jinja2 2.11.3 pyhd3eb1b0_0
jinja2-time 0.2.0 pyhd3eb1b0_2
joblib 1.1.0 pyhd3eb1b0_0
jpeg 9d h7f8727e_0
json5 0.9.6 pyhd3eb1b0_0
jsonschema 3.2.0 pyhd3eb1b0_2
jupyter 1.0.0 py39h06a4308_7
jupyter-contrib-core 0.3.3 pypi_0 pypi
jupyter-contrib-nbextensions 0.5.1 pypi_0 pypi
jupyter-highlight-selected-word 0.2.0 pypi_0 pypi
jupyter-latex-envs 1.4.6 pypi_0 pypi
jupyter-nbextensions-configurator 0.4.1 pypi_0 pypi
jupyter_client 6.1.12 pyhd3eb1b0_0
jupyter_console 6.4.0 pyhd3eb1b0_0
jupyter_core 4.8.1 py39h06a4308_0
jupyter_server 1.4.1 py39h06a4308_0
jupyterlab 3.2.1 pyhd3eb1b0_1
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 2.8.2 pyhd3eb1b0_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
jxrlib 1.1 h7b6447c_2
keyring 23.1.0 py39h06a4308_0
kiwisolver 1.3.1 py39h2531618_0
krb5 1.19.2 hac12032_0
lazy-object-proxy 1.6.0 py39h27cfd23_0
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.35.1 h7274673_9
lerc 3.0 h295c915_0
libaec 1.0.4 he6710b0_1
libarchive 3.4.2 h62408e4_0
libcurl 7.78.0 h0b77cf5_0
libdeflate 1.8 h7f8727e_5
libedit 3.1.20210910 h7f8727e_0
libev 4.33 h7f8727e_1
libffi 3.3 he6710b0_2
libgcc-ng 9.3.0 h5101ec6_17
libgfortran-ng 7.5.0 ha8ba4b0_17
libgfortran4 7.5.0 ha8ba4b0_17
libgomp 9.3.0 h5101ec6_17
liblief 0.10.1 h2531618_1
libllvm11 11.1.0 h3826bc1_0
libnghttp2 1.41.0 hf8bcb03_2
libpng 1.6.37 hbc83047_0
libsodium 1.0.18 h7b6447c_0
libspatialindex 1.9.3 h2531618_0
libssh2 1.9.0 h1ba5d50_1
libstdcxx-ng 9.3.0 hd4cf53a_17
libtiff 4.2.0 h85742a9_0
libtool 2.4.6 h7b6447c_1005
libuuid 1.0.3 h7f8727e_2
libuv 1.40.0 h7b6447c_0
libwebp 1.2.0 h89dd481_0
libwebp-base 1.2.0 h27cfd23_0
libxcb 1.14 h7b6447c_0
libxml2 2.9.12 h03d6c58_0
libxslt 1.1.34 hc22bd24_0
libzopfli 1.0.3 he6710b0_0
llvmlite 0.37.0 py39h295c915_1
locket 0.2.1 py39h06a4308_1
lxml 4.6.3 py39h9120a33_0
lz4-c 1.9.3 h295c915_1
lzo 2.10 h7b6447c_2
markdown-it-py 3.0.0 pypi_0 pypi
markupsafe 1.1.1 py39h27cfd23_0
matplotlib 3.4.3 py39h06a4308_0
matplotlib-base 3.4.3 py39hbbc1b5f_0
matplotlib-inline 0.1.2 pyhd3eb1b0_2
mccabe 0.6.1 py39h06a4308_1
mdurl 0.1.2 pypi_0 pypi
mistune 0.8.4 py39h27cfd23_1000
mkl 2021.4.0 h06a4308_640
mkl-service 2.4.0 py39h7f8727e_0
mkl_fft 1.3.1 py39hd3c417c_0
mkl_random 1.2.2 py39h51133e4_0
mock 4.0.3 pyhd3eb1b0_0
more-itertools 8.10.0 pyhd3eb1b0_0
mpc 1.1.0 h10f8cd9_1
mpfr 4.0.2 hb69a4c5_1
mpi 1.0 mpich
mpich 3.3.2 hc856adb_0
mpmath 1.2.1 py39h06a4308_0
msgpack-python 1.0.2 py39hff7bd54_1
multipledispatch 0.6.0 py39h06a4308_0
munkres 1.1.4 py_0
mypy_extensions 0.4.3 py39h06a4308_0
navigator-updater 0.2.1 py39h06a4308_0
nbclassic 0.2.6 pyhd3eb1b0_0
nbclient 0.5.3 pyhd3eb1b0_0
nbconvert 6.1.0 py39h06a4308_0
nbformat 5.1.3 pyhd3eb1b0_0
ncurses 6.3 heee7806_1
nest-asyncio 1.5.1 pyhd3eb1b0_0
networkx 2.6.3 pyhd3eb1b0_0
nltk 3.6.5 pyhd3eb1b0_0
nose 1.3.7 pyhd3eb1b0_1006
notebook 6.4.5 py39h06a4308_0
numba 0.54.1 py39h51133e4_0
numexpr 2.7.3 py39h22e1b3c_1
numpy 1.25.1 pypi_0 pypi
numpydoc 1.1.0 pyhd3eb1b0_1
olefile 0.46 pyhd3eb1b0_0
openjpeg 2.4.0 h3ad879b_0
openpyxl 3.0.9 pyhd3eb1b0_0
openssl 1.1.1l h7f8727e_0
packaging 23.1 pypi_0 pypi
pandas 2.0.3 pypi_0 pypi
pandocfilters 1.4.3 py39h06a4308_1
pango 1.45.3 hd140c19_0
parso 0.8.2 pyhd3eb1b0_0
partd 1.2.0 pyhd3eb1b0_0
patchelf 0.13 h295c915_0
path 16.0.0 py39h06a4308_0
path.py 12.5.0 hd3eb1b0_0
pathlib2 2.3.6 py39h06a4308_2
pathspec 0.7.0 py_0
patsy 0.5.2 py39h06a4308_0
pcre 8.45 h295c915_0
pep8 1.7.1 py39h06a4308_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.4.0 py39h5aabda8_0
pip 21.2.4 py39h06a4308_0
pixman 0.40.0 h7f8727e_1
pkginfo 1.7.1 py39h06a4308_0
plotly 5.11.0 pypi_0 pypi
pluggy 0.13.1 py39h06a4308_0
ply 3.11 py39h06a4308_0
pooch 1.7.0 pypi_0 pypi
poyo 0.5.0 pyhd3eb1b0_0
prometheus_client 0.11.0 pyhd3eb1b0_0
prompt-toolkit 3.0.20 pyhd3eb1b0_0
prompt_toolkit 3.0.20 hd3eb1b0_0
psutil 5.8.0 py39h27cfd23_1
ptyprocess 0.7.0 pyhd3eb1b0_2
py 1.10.0 pyhd3eb1b0_0
py-lief 0.10.1 py39h2531618_1
pycodestyle 2.7.0 pyhd3eb1b0_0
pycosat 0.6.3 py39h27cfd23_0
pycparser 2.20 py_2
pycurl 7.44.1 py39h8f2d780_1
pydantic 1.10.12 pypi_0 pypi
pydocstyle 6.1.1 pyhd3eb1b0_0
pyerfa 2.0.0 py39h27cfd23_0
pyflakes 2.3.1 pyhd3eb1b0_0
pygments 2.15.1 pypi_0 pypi
pyjwt 2.1.0 py39h06a4308_0
pylint 2.9.6 py39h06a4308_1
pyls-spyder 0.4.0 pyhd3eb1b0_0
pyodbc 4.0.31 py39h295c915_0
pyopenssl 21.0.0 pyhd3eb1b0_1
pyparsing 3.0.4 pyhd3eb1b0_0
pyqt 5.9.2 py39h2531618_6
pyrsistent 0.18.0 py39heee7806_0
pysocks 1.7.1 py39h06a4308_0
pytables 3.6.1 py39h77479fe_1
pytest 6.2.4 py39h06a4308_2
python 3.9.7 h12debd9_1
python-dateutil 2.8.2 pyhd3eb1b0_0
python-libarchive-c 2.9 pyhd3eb1b0_1
python-lsp-black 1.0.0 pyhd3eb1b0_0
python-lsp-jsonrpc 1.0.0 pyhd3eb1b0_0
python-lsp-server 1.2.4 pyhd3eb1b0_0
python-slugify 5.0.2 pyhd3eb1b0_0
pytz 2021.3 pyhd3eb1b0_0
pywavelets 1.1.1 py39h6323ea4_4
pyxdg 0.27 pyhd3eb1b0_0
pyyaml 6.0 py39h7f8727e_1
pyzmq 22.2.1 py39h295c915_1
qdarkstyle 3.0.2 pyhd3eb1b0_0
qstylizer 0.1.10 pyhd3eb1b0_0
qt 5.9.7 h5867ecd_1
qtawesome 1.0.2 pyhd3eb1b0_0
qtconsole 5.1.1 pyhd3eb1b0_0
qtpy 1.10.0 pyhd3eb1b0_0
readline 8.1 h27cfd23_0
regex 2021.8.3 py39h7f8727e_0
requests 2.26.0 pyhd3eb1b0_0
rich 13.4.2 pypi_0 pypi
ripgrep 12.1.1 0
rope 0.19.0 pyhd3eb1b0_0
rtree 0.9.7 py39h06a4308_1
ruamel_yaml 0.15.100 py39h27cfd23_0
scikit-image 0.18.3 py39h51133e4_0
scikit-learn 0.24.2 py39ha9443f7_0
scikit-learn-intelex 2021.3.0 py39h06a4308_0
scipy 1.11.1 pypi_0 pypi
seaborn 0.11.2 pyhd3eb1b0_0
secretstorage 3.3.1 py39h06a4308_0
send2trash 1.8.0 pyhd3eb1b0_1
setuptools 58.0.4 py39h06a4308_0
simplegeneric 0.8.1 py39h06a4308_2
singledispatch 3.7.0 pyhd3eb1b0_1001
sip 4.19.13 py39h2531618_0
six 1.16.0 pyhd3eb1b0_0
snappy 1.1.8 he6710b0_0
sniffio 1.2.0 py39h06a4308_1
snowballstemmer 2.1.0 pyhd3eb1b0_0
sortedcollections 2.1.0 pyhd3eb1b0_0
sortedcontainers 2.4.0 pyhd3eb1b0_0
soupsieve 2.2.1 pyhd3eb1b0_0
sphinx 4.2.0 pyhd3eb1b0_1
sphinxcontrib 1.0 py39h06a4308_1
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 2.0.0 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.5 pyhd3eb1b0_0
sphinxcontrib-websupport 1.2.4 py_0
spyder 5.1.5 py39h06a4308_1
spyder-kernels 2.1.3 py39h06a4308_0
sqlalchemy 1.4.22 py39h7f8727e_0
sqlite 3.36.0 hc218d9a_0
statsmodels 0.12.2 py39h27cfd23_0
sympy 1.9 py39h06a4308_0
tbb 2021.4.0 hd09550d_0
tbb4py 2021.4.0 py39hd09550d_0
tblib 1.7.0 pyhd3eb1b0_0
tenacity 8.1.0 pypi_0 pypi
terminado 0.9.4 py39h06a4308_0
testpath 0.5.0 pyhd3eb1b0_0
text-unidecode 1.3 pyhd3eb1b0_0
textdistance 4.2.1 pyhd3eb1b0_0
threadpoolctl 2.2.0 pyh0d69192_0
three-merge 0.1.1 pyhd3eb1b0_0
tifffile 2021.7.2 pyhd3eb1b0_2
tinycss 0.4 pyhd3eb1b0_1002
tk 8.6.11 h1ccaba5_0
toml 0.10.2 pyhd3eb1b0_0
toolz 0.11.1 pyhd3eb1b0_0
tornado 6.1 py39h27cfd23_0
tqdm 4.62.3 pyhd3eb1b0_1
traitlets 5.1.0 pyhd3eb1b0_0
typed-ast 1.4.3 py39h7f8727e_1
typing-extensions 4.7.1 pypi_0 pypi
tzdata 2023.3 pypi_0 pypi
ujson 4.0.2 py39h2531618_0
unicodecsv 0.14.1 py39h06a4308_0
unidecode 1.2.0 pyhd3eb1b0_0
unixodbc 2.3.9 h7b6447c_0
urllib3 1.26.7 pyhd3eb1b0_0
watchdog 2.1.3 py39h06a4308_0
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py39h06a4308_1
werkzeug 2.0.2 pyhd3eb1b0_0
wheel 0.37.0 pyhd3eb1b0_1
whichcraft 0.6.1 pyhd3eb1b0_0
widgetsnbextension 3.5.1 py39h06a4308_0
wrapt 1.12.1 py39he8ac12f_1
wurlitzer 2.1.1 py39h06a4308_0
xarray 2023.7.0 pypi_0 pypi
xlrd 2.0.1 pyhd3eb1b0_0
xlsxwriter 3.0.1 pyhd3eb1b0_0
xlwt 1.3.0 py39h06a4308_0
xmltodict 0.12.0 pyhd3eb1b0_0
xz 5.2.5 h7b6447c_0
yaml 0.2.5 h7b6447c_0
yapf 0.31.0 pyhd3eb1b0_0
zeromq 4.3.4 h2531618_0
zfp 0.5.5 h2531618_6
zict 2.0.0 pyhd3eb1b0_0
zipp 3.6.0 pyhd3eb1b0_0
zlib 1.2.11 h7b6447c_3
zope 1.0 py39h06a4308_1
zope.event 4.5.0 py39h06a4308_0
zope.interface 5.4.0 py39h7f8727e_0
zstd 1.4.9 haebb681_0

[d-chambers]

It looks like your pytables is old (3.8 was released in Dec of 2022). Try upgrading your pytables, if that works we can pin pytables to > 3.7. This issue is related.

[jinwar]

@d-chambers Yes. Problem solved after upgrading pytables to 3.8.0
pip install --upgrade tables