Comments (2)
This sounds like a great idea @JasonJWilliamsNY. I'll put in a PR to add a challenge question there.
from wrangling-genomics.
This exercise is now implemented as the last exercise in https://github.com/datacarpentry/wrangling-genomics/blob/gh-pages/_episodes/00-quality-control.md
from wrangling-genomics.
Related Issues (20)
- AWS AMI missing fastqc and related tools HOT 1
- Variant Calling Workflow: example has incorrect samtool sort options and param HOT 1
- Update Variant Calling workflow
- Add the use of MultiQC to combine fastqc file in section 02-quality-control
- wrangling-genomics/04-variant_calling: Viewing with IGV - typo HOT 2
- Error on scp with zsh HOT 1
- Use of SRA Explorer to Download FastQC Files ?
- Adapt trimmomatic command
- Assessing Read Quality: Improve the visualisation of Phred Quality Scores HOT 1
- Where does the build recipe for the 'dataCgen-qc' AMI live?
- Lesson Contribution: Assessing Read Quality HOT 1
- Incorrect directory (bcf) under Step 3 in variant calling part HOT 2
- Need jump lists (anchors) for headings
- Consider updating the trimming tool to something a bit friendlier HOT 3
- Add alt text for images included in the lesson for improved accessibility
- Grammatical / typo errors in Trimming and Filtering
- Transition To Workbench in May HOT 9
- Links need to be fixed in CONTRIBUTING.md
- Update software versions
- Variant Calling testing cmds should match script
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from wrangling-genomics.