Comments (4)
Hello,
Yes, we are working on making a training/validation/test data for PDB biounits that were used to train ProteinMPNN publicly available. I will let you know when it is ready!
from proteinmpnn.
Sounds great! Thanks!
from proteinmpnn.
thanks for the interesting work! I am waiting for this dataset split so long. how is the progress? thank you very much
from proteinmpnn.
See valid and test clusters here: https://github.com/dauparas/ProteinMPNN/tree/main/training
from proteinmpnn.
Related Issues (20)
- question: prob vs log_prob matrices
- Where is the LigandMPNN HOT 2
- --bias_by_res_jsonl example? HOT 3
- Question about global vs local score HOT 1
- From 2 distinct structure to a single sequence ? HOT 4
- Tying Multiple Chains Independently HOT 4
- Indexing with Missing Residues HOT 4
- Clarify 'design chains' HOT 1
- conditional_probs_only_backbone is ignored when used alone
- Warnings From Example Scripts? HOT 2
- `parse_cif_noX.py` misses some chains in CATH? HOT 2
- Training model
- Retrieve per-position scores or score a chain in the context of another
- whether to redesign low confidence aas
- Design complexes with unknown chains (proposed fix included)
- Amino acid sequence has too many "K/E" HOT 2
- How do I use a PSSM with proteinMPNN?
- Need of assistance and advising
- Model is adding an amino acid to the original sequence HOT 5
- Creates hydrophobic surface patches wit many Ala side chains HOT 2
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