davidaknowles Goto Github PK

adaglm

aeropython

Classical Aerodynamics of potential flow using Python, for Prof. Barba's course at GW (1st version:Spring 2014, 2nd run:2015).

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

casopr

Continuous Annotation-aware Shrinkage Of Polygenic Risk

cluster_expression

Code to cluster genes based on expression probabilities from DESeq2 using a beta mixture model.

davidaknowles.github.io

Github Pages homepage

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

dplyr

dplyr: A grammar of data manipulation

dpvc

Dirichlet Process Variable Clustering

eagle

An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

eagle1s

Re-implementation of EAGLE using Stan.

eagle2

Environment-ASE through Generalized LinEar modeling, v2

edward_betabinomial

Beta binomial likelihood for Edward

epidiff

gamma_sgvb

git-gud

Material for a presentation I gave on ramping up with Git.

gprn

Gaussian Process Regression Network code

gpu-finder

idg_dream

Illuminating the Druggable Genome (IDG)-DREAM Challenge

implicit

kbroman.github.io

Karl Broman's website

lacrosse

lacrosse: LAtent ChaRacteristics Of Small-molecule SEnsitivity. David A Knowles, Gina Bouchard, Sylvia Plevritis.

lc_conda

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

leafcutter_conda

lobico

Fork of LOBICO with some installation details

mini-conf

Run a conference from your backyard.

mlcb.github.io

Machine Learning in Computational Biology workshop site

nsfa

Nonparametric Bayesian Sparse Factor Analysis