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David Cotter's Projects

contextualdecomposition icon contextualdecomposition

Demo for method introduced in "Beyond Word Importance: Contextual Decomposition to Extract Interactions from LSTMs"

deeplearningproject icon deeplearningproject

An in-depth machine learning tutorial introducing readers to a whole machine learning pipeline from scratch.

fabric-web icon fabric-web

Taking the magic of fabric and throwing up as a website for ease of use.

gluhn.py icon gluhn.py

Check / Generate PAN based on Luhn algorithm

gor icon gor

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

htslib icon htslib

C library for high-throughput sequencing data formats

labs icon labs

Rmd source files for the HarvardX series PH525x

nextflow icon nextflow

A DSL for data-driven computational pipelines

nf-hello icon nf-hello

Classic hello world script in Nextflow language

preprocess icon preprocess

Preprocess HTML, JavaScript, and other files with directives based off custom or ENV configuration

pyensembl icon pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

pynnotator icon pynnotator

This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.

react-flux-cart icon react-flux-cart

Code for the tutorial by @kenwheeler: Create a Shopping Cart Using React.js and Flux

tophat icon tophat

Spliced read mapper for RNA-Seq

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