davidtingley Goto Github PK

3d_print_designs

api-matlab

api-python

behavioral-experiments

a place for all code (arduino/matlab) used for behavioral experiments

buzcode

Code for internal lab sharing - polishing has started but is by no means complete

dat

:floppy_disk: Sync data across the distributed web.

diff

Python script that compares two HDF5 files.

ephys-processing-pipeline

eventtrees

gym-minigrid

Minimalistic gridworld package for OpenAI Gym

kilosort

GPU code for spike sorting

kilosortwrapper

klustakwik2

Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures

magic

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

matlab

fork of MATLAB 2016b matlab engine for python

neuralensemble-docker

Docker images for neuroscience

nstat

Neural Spike Train Analysis Toolbox for Matlab

octave

An example of using Octave on mybinder.org

papers

code used for specific projects

patchwarp

Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.

pipe

Twophoton pipeline

pulsepal

Code and CAD for Pulse Pal

pyetrade

Python E-Trade API Wrapper

pynwb

A Python API for working with Neurodata stored in the NWB Format

python-binance

Binance Exchange API python implementation for automated trading

ripplenet

rnr_methods

methods for detecting/quantifying reactivation and replay in neural data

sbx2imagej

sbx2imagej, is a wrapper between sbxreader and pyimagej, sbxreader takes care of loading sbx files and pyimagej takes care of showing them in imagej.

scratch

a place for temporary scripts and things I am currently working on

seqnmf

An algorithm for unsupervised discovery of sequential structure