Comments (3)
I'v got the same error - two year later, command "kraken-build --standard ..."
gzip: plasmid.1.1.genomic.fna.gz: invalid compressed data--format violated
gzip: plasmid.2.1.genomic.fna.gz: invalid compressed data--format violated
gzip: plasmid.3.1.genomic.fna.gz: invalid compressed data--format violated
gzip: plasmid.4.1.genomic.fna.gz: invalid compressed data--format violated
gzip: plasmid.5.1.genomic.fna.gz: invalid compressed data--format violated
Bernd S.
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Haven't you solved the problem?
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Hello everyone, I found the method to solve this problem:
DerrickWood/kraken2#515 (comment)
You can try this, and it's worked for me, and here is an example for the path of the script file which need to be modified:
/public/apps/anaconda/envs/kraken2/share/kraken2-2.1.3-1/libexec/download_genomic_library.sh
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Related Issues (20)
- gzip: .gz: not in gzip format
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