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I am a PhD student at the Insitute of Cancer Research and Imperial College London researching Deep Learning in Cancer Biology under the supervision of Chris Bakal and Chris Dunsby. My PhD is part of the CRUK Accelerator award. I have an undergraduate degree in Statistics from the University of Cape Town and a master's degree in Artificial Intelligence from the University of Southampton.

My current work focuses on developing computer vision techniques to understand live 3D cancer biology. My research interests are in Geometric Deep Learning, 3D Computer Vision, Shape Analysis and Explainable AI.

Please see my organisations - Sentinal4D and MagniViT - for my work on geometric deep learning in cancer biology, and vision transformers for classification of soft tissue sarcoma from whole slide images.

Aside from my work and research, I am an avid runner, swimmer, cyclist, and footballer.

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Matt De Vries's Projects

image_segmentation icon image_segmentation

Pytorch implementation of U-Net, R2U-Net, Attention U-Net, and Attention R2U-Net.

iternet icon iternet

IterNet: Retinal Image Segmentation Utilizing Structural Redundancy in Vessel Networks. High-accuracy medical retina (eye) image segmentation.

ivy icon ivy

The Unified Machine Learning Framework

lazypredict icon lazypredict

Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning

medicaldetectiontoolkit icon medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

modelnet icon modelnet

Python loading/manipulation functions for modelnet datasets

mscprojects icon mscprojects

A repository containing the projects from my MSc. in Artificial Intelligence from the University of Southampton

objfile-to-binvox-to-nparray icon objfile-to-binvox-to-nparray

A set of small programs and scripts to convert OBJ 3D file into vox space and then import it into python as an np array

occupancy_flow icon occupancy_flow

This repository contains the code for the ICCV 2019 paper "Occupancy Flow - 4D Reconstruction by Learning Particle Dynamics"

p4transformer icon p4transformer

Implementation of the "Point 4D Transformer Networks for Spatio-Temporal Modeling in Point Cloud Videos" paper.

pointmlp-pytorch icon pointmlp-pytorch

(ICLR 2022 poster) Official PyTorch implementation of "Rethinking Network Design and Local Geometry in Point Cloud: A Simple Residual MLP Framework"

pointnet2_pytorch icon pointnet2_pytorch

PyTorch implementation of Pointnet2/Pointnet++ which compilation issues have been resolved

ppf-foldnet icon ppf-foldnet

PyTorch reimplementation for "PPF-FoldNet: Unsupervised Learning of Rotation Invariant 3D Local Descriptors" https://arxiv.org/abs/1808.10322

pygat icon pygat

Pytorch implementation of the Graph Attention Network model by Veliฤkoviฤ‡ et. al (2017, https://arxiv.org/abs/1710.10903)

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