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adcomp

AD computation with Template Model Builder (TMB)

advanced-cplusplus

asdar-book.org

data and scripts for the ASDAR book

bayestestr

:ghost: Utilities for analyzing Bayesian models and posterior distributions

casal2

Integrated Population Dynamics Model (Casal2)

example-models

Example models for Stan

fishstatsutils

Shared resources for spatio-temporal models

flbeiagadget-test

A Management Strategy Evaluation (MSE) framework using FLBEIA and Gadget

fsa

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

gadget3

TMB-based gadget implemtation

ggmcmc

Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference

glmmtmb

glmmTMB

gmacs

A generic size-structured stock assessment model

gmacs_assessment_code

The source code for GMACS

icesdatras

R interface to DATRAS trawl database web services

icessag

R interface to Stock Assessment Graphs database web services

kruschke-doing_bayesian_data_analysis

John K. Kruschke's Doing Bayesian Data Analysis: A Tutorial with R and BUGS

lime

Length-based integrated mixed effects model

mizer

Multi-species size-based ecological modelling in R

mse4bias

A management strategy evaluation (MSE) framework for persistent estimation bias in stock assessment

r4ss

files for r4ss package

rcpp-gallery

Source code for the Rcpp Gallery website

rethinking

Statistical Rethinking course and book package

rpath

R implementation of the mass balance model Ecopath with Ecosim

rtmb

R bindings to TMB

sam

Git page for SAM R-package

sdmtmb

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

seibmearlylife

A spatially explicit individual-based model for fish early life histories

seibmfoodweb

A spatially explicit individual-based food web model for a large ecosystem

seibmriverfish

A spatially explicit (1D) individual-based model for large river fish