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View Code? Open in Web Editor NEWUses DCGAN to generate images of dendritic morphologies for graunle and pyramidal cells
Uses DCGAN to generate images of dendritic morphologies for graunle and pyramidal cells
Author: Darian Hadjiabadi email: [email protected] ------------------------------------------------------ I'll try to make the readme quick - it's just to describe file hierarchy. gan/ - Contains code for building architecture and training a general adversarial network utils/ - Contains code for preprocessing and visualization database-swc-full/ - Contains all swc files downloaded from NeuroMorpho database-imgs-full/ - Contains 64x64 images for pyramidal and granule cells after preprocessing output-large/ - Contains outputs from DCGAN. models/ - Contains the 'best' DCGAN models for each class of neuron. Can be read in and used to generate dendritic morphologies. preprocessing.ipynb - shows preprocessing steps granule(pyramidal)-gan-development.ipynb - steps to build DCGAN model granule(pyramidal)-quantitaive-assessmnet.ipynb - visualize and plots network weights. Use kernel MMD to quantify model quality generalization-check.ipynb - Use kernel MMD to access overfitting for both granule and pyramidal DCGAN models granule(pyramidal)-qualitative-assessment.ipynb - creates shuffled datasets of real and fake images for users to disern real from fake generate_morphologies.ipynb - Loads in built models and generates images. Additional: database-imgs-small, database-swc-small, output-small, testing-platform.ipynb were all used for testing
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