dicerna Goto Github PK

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

aws-genomics-workflows

Genomics Workflows on AWS

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

data-engineering-with-databricks-english

devnet

The DevNet project on github stores the PacBio DevNet website.

dicerna

Config files for my GitHub profile.

dicerna-rnaseq

nf-core rnaseq pipeline adpated to dicerna aws

differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

gggenome

塩基配列を高速に検索するウェブサービス

github-final-project

IBM git and github class final project

lrassemblyanalysis

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

mlp-regression-template

Example repo to kickstart integration with mlflow pipelines.

nfcamp-tutorial

A tutorial for DLS-2 migration

practical-machine-learning-with-python

Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.

pyhillfit

Code to load and fit dose response curves in a Bayesian inference framework

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnavar

gatk4 RNA variant calling pipeline

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

smrnaseq

A small-RNA sequencing analysis pipeline

tama

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

tuxedo-nf

A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown