Comments (2)
could you just loop through the whole dataframe and delete rows that are below the threshold?
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At the end use pandas to subset dataframe by threshold above a certain number (set by the third argument).
NOTE: Make sure that the third argument that sets the threshold is optional input and if threshold is not set, the program outputs everything.
from map_motif.
Related Issues (16)
- Line 92 Cannot be hardcoded HOT 2
- a lot of the data frames have columns where the same piece of text is fills the whole column. Would it be more efficient if we stored it in one place instead of for every column in the data frame? HOT 1
- Read through code and see how to make more efficient and more pythonic.
- It would be great to make this a python package rather that a script that is run from command line. HOT 2
- Read in only one raw sequence option HOT 3
- Redundant files and organization
- File input for Jupyter Notebook
- Optional Argument Proper Syntax?
- For command line version: update new features.
- Add visualization HOT 1
- map_motif.py table output to .csv
- Make tools to convert PWM
- Make map_motif.py script into Python 3 compatible
- clarification of line HOT 1
- Add print statements. HOT 1
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