Related Issues (20)
- Allow extraction by defining file segments and segment number HOT 1
- extract mode will not auto-create and find .fqi file for FASTQ, if -i is not set.
- Consider to check the output fqi file size for faulty / abusive indexer behaviour HOT 7
- Allow random output of records or segments
- S3 input/output HOT 1
- Allow retrieval of multiple intervals/partitions in one command
- Add CI (Travis?)
- Create Buildscript
- Add GitHub page? Or RTD?
- Rework text elements like temporary folders/files and help texts
- Improve quality of explanation for the building and integration of the S3 libraries
- Add different index entry storage strategies.
- Extend error handling while calling readCompressedDataFromSource()
- Make messages shorter without loss of clarity or correctness.
- Implement a state model for e.g. the ZLibBasedFASTQProcessorBase
- Make three separate projects: GZLineIndEx, FastqIndEx and FastqIndExLib
- Improve S3 error recognition for download (And also in general) HOT 1
- Runtime check: Can the requested number of lines (or the maximum number of lines) be extracted?
- Change source and sink methods so, that they use the Result type as a return value for most methods.
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from fastqindex.