dmalzl Goto Github PK

Name: Daniel Malzl

Type: User

Company: CeMM - Research Center for Molecular Medicine of the Austrian Academy of Sciences

Bio: coding enthusiast / biological data scientist / intrigued by the complexity of modern computer everything

Location: Vienna Austria

Daniel Malzl's Projects

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

An easy to use tool to count hashtag oligos from 10x cellranger output

A deep learning toolkit for mass spectrometry

An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser

Example workflow illustrating how to use nextflow in sequence data analysis

jupyter notebooks for the course mathematisches programmieren

A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI accessions and data extraction from ARCHS4

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Generic Nextflow processes for next-generation sequencing data analysis

A simple library for building neural networks for multi-class classification

A repository containing code for the practical in numerical mathematics

An easy to use python tool for fast sequence data demultiplexing

A python library for creating alluvial diagrams

Concise, consistent, and legible badges in SVG and raster format

A bit of code to interconvert objects between the Seurat and RISC environments for scRNA-seq data analysis