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Douglas Myers-Turnbull's Projects

atom-tin icon atom-tin

Tiny Scala API to stream, parse, and cache atom coordinates from Protein Data Bank files

augustus icon augustus

An open source re-implementation of Caesar III

awesome-pyproject icon awesome-pyproject

An Awesome List of projects using the pyproject.toml Python configuration file.

bioio icon bioio

Micro-libraries for reading and writing genomic sequence data in various formats.

biojava icon biojava

BioJava is an open-source project dedicated to providing a Java framework for processing biological data.

biozernike icon biozernike

Protein structure descriptors and alignment based on 3D Zernike moments.

clana icon clana

CLANA is a toolkit for classifier analysis.

codons icon codons

BENG 183 project: codon usage bias and protein structure

commitizen icon commitizen

Create committing rules for projects :rocket: auto bump versions :arrow_up: and auto changelog generation :open_file_folder:

dep-license icon dep-license

Report license information for dependencies in use by a Python project

desert-latex icon desert-latex

Ultra-modern feature-packed LaTeX 3 class for dissertations and reports

e3fp icon e3fp

3D molecular fingerprints

ectree icon ectree

A tree structure for Enzyme Commission numbers.

fastapi-sso icon fastapi-sso

FastAPI plugin to enable SSO to most common providers (such as Facebook login, Google login and login via Microsoft Office 365 Account)

gale icon gale

A simple language for encoding time-series values.

hgvs icon hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

mandos icon mandos

Fetch pharmacological knowledge on chemical compounds and squeeze it into semantic triples. For analysis of chemical screens and training and evaluation of algorithms.

network-merge icon network-merge

Annotates edges with a rudimentary score and collapses cliques that consist of interologs.

pipe-dream icon pipe-dream

Fast, distributed next-next-generation DNA sequencing pipeline written in Scala and built on ADAM and Docker. Generates phased calls from reads.

pocketutils icon pocketutils

Everyday pocket-sized Python functions for you to copy or import.

protodomain-search icon protodomain-search

Search for subunits of tertiary psuedosymmetry that occur throughout fold space

pynd-pubs-ms icon pynd-pubs-ms

Physical Underpinnings of Biological Systems 2015, group E. Poss - PyND

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