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Don Kang's Projects

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Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.

biopython icon biopython

Official git repository for Biopython (converted from CVS)

bms038_analysis icon bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

cancervar icon cancervar

Clinical interpretation of somatic mutations in cancer

clustering.jl icon clustering.jl

Basic functions for clustering data: k-means, dp-means, etc.

d3 icon d3

A JavaScript visualization library for HTML and SVG.

dask icon dask

Parallel computing with task scheduling

ipython icon ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

keras icon keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

metapca icon metapca

MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data

metaqc icon metaqc

MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis

pdftk-brew icon pdftk-brew

http://www.pdflabs.com/tools/pdftk-the-pdf-toolkit/

qiime icon qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

shiny icon shiny

Easy interactive web applications with R

tenxbenchmarking icon tenxbenchmarking

Benchmarking R & Bioconductor performance working with large-scale single-cell data

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