Name: Logan Dowdle
Type: User
Company: Center for Magnetic Resonance Research
Bio: Postdoc at the Center for Magnetic Resonance Research at the University of Minnesota. Likes functional fMRI, the smaller the voxels, the better
Twitter: dowdlelt
Location: Minneapolis, MN
Logan Dowdle's Projects
Examples from Nuts and Bolts Multiband Talk
List of practicals used for the fMRI data analysis course of UoB (UK) between 2014 and 2017
Simple bash script that downloads and installs ANTs in a unix environment
Scripts, tools, and documents on creating, parsing, and working with BIDS-structured data sets.
A conversion tool for creating NDA compatible metadata representation from BIDS datasets.
Advanced Statistical Computing at Vanderbilt University's Department of Biostatistics
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
Python functions to convert E-Prime files to csvs. Not currently being developed, but issues and PRs welcome!
:angel: Morph faces with Python, Numpy, Scipy
A toolbox for accurate single-trial estimates in fMRI time-series data
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
MATLAB utility functions written by Kendrick Kay
Stand alone fMRI software suite for layer-fMRI analyses.
Useful for making plots from MEICA
Prantik Kundu's MEICA
Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
Examples demonstrating the usage of OSMnx
PREPAIR is an unsupervised physiological noise correction method using magnitude and phase data instead of external recordings to identify physiological fluctuations in the brain..
PreSurgMapp is a user-friendly, open souce, MATLAB toolbox for pipelined data processing with a dedicated design for individualized presurgical mapping of eloquent functional areas based on multimodal functional MRI.
Pycortex is a python-based toolkit for surface visualization of fMRI data
Short and Useful code
Matlab code to make subject batch processing, artifact removal and other tedious jobs in SPM (Statistical Parametric Mapping) much, much easier.
Temporal Decomposition through Manifold Fitting
TE-dependent analysis of multi-echo fMRI