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absolute

ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38

bbbp-attention

Deep learning exercise: build an attention-based model to predict molecules' BBBP

bracketology.jl

Modeling and prediction for sports brackets

canine

A modular, high-performance computing solution to run jobs using SLURM

containers

some singularity containers

covid-19-nlp

Text mining on COVID-19 scientific literature

covid-19-viz

Visualizations for the COVID-19 pandemic

dalmatian

dalmatian is a collection of high-level companion functions for Firecloud and FISS.

dictvis.jl

Quickly generate interactive plots of model parameters

dpmerrell.github.io

ethercalc

Node.js port of Multi-user SocialCalc

finvis

visualizations for personal finance

fromtemplate

Quickly generate files and directories from templates. Install as a python package/command line tool

gen

A general-purpose probabilistic programming system with programmable inference

gen-experiments

Getting to know the `Gen` probabilistic programming language

glmnet.jl

Julia wrapper for fitting Lasso/ElasticNet GLM models using glmnet

gpumatfac.jl

GPU implementation of low rank matrix factorization model -- in Julia

htcondor

Snakemake profile for HTCondor

letter-template

A LaTeX template for formal letters

lowrankmodels.jl

LowRankModels.jl is a julia package for modeling and fitting generalized low rank models.

matfac.jl

A general-purpose, extensible Julia package for GPU-accelerated matrix factorization

matgiflib

Making GIFs easy with Matplotlib

msmutect2

Accurate detection of somatic MS (microsatellite) indels.

nnlayers.jl

Implementations of neural network layers (for educational purposes)

pathmatfac.jl

A matrix factorization model for multi-omic data and biological pathways

phylogicndt

Fork for adding Python 3/hg38 support to PhylogicNDT

project-euler-gallery

D3.js visualizations of project euler puzzle solutions

prophetic-granger-causality

pynbs-singularity

Singularity container for PyNBS

randomized_assignment

Randomized-assignment algorithms that I've implemented in the course of doing research