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Name: Doko-Miles Thorburn
Type: User
Bio: Senior Bioinformatician
Location: London
Name: Doko-Miles Thorburn
Type: User
Bio: Senior Bioinformatician
Location: London
A pipeline designed for the Crisanti Lab for genome-wide methylation calls using ONT Fast5 data
A genome-wide scan for balancing selection using various metrics, including Tajima's D, Wattersons Estimator, NCD, LD, Ne, and neutral simulations
Developmental isoform and expression analyses
A nextflow pipeline developed to trim and map genomic reads to the Anopheles gambiae reference genome. This pipeline was originally developed for the Crisanti Lab.
Modified scripts to generate NCD input files from VCFs, and calculate the NCD1 statistic.
Parts of a pipeline to process highly-polymophic paired end sequences
This repository is paired with a currently unpublished chapter on my PhD thesis and serves as a set of example scripts and pipelines used in the study. We investigated the impact of using a local reference genome on multiple commonly used metrics in population genomics. Additionally, we released a reference genome based on a European derived 2nd generation gynogen fish.
Anopheles gambiae Orthology, Expression, & Gene Function Tool. Designed to aid in candidate gene searches.
A project in the Cristanti Lab exploring the protamine genes. Also contains the nextflow phylogenetic tree construction pipeline.
A collection of tools and protocols to increase throughput of existing methods used in the dry and wet lab.
Site for Resurrect Bio
A nextflow pipeline that conducts the STAR 2-pass mapping steps for variant calling RNA-seq data with GATK (See Genomic_Read_Processing repo).
A nextflow pipeline developed for consensus (SURVIVOR) structural variant discovery using Lumpy and Delly.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.