Name: David Winter
Type: User
Bio: Computational evolutionary biology using R, Python and (sometimes) C++
Location: Wellington, New Zealand
I an an evolutoinary biologist using genomics approaches to ask fundamental biological questions. Code here includes mature tools for downloading, cleaning and analysing biolgoical data; in-development tools that arise from my research code and supporting data from some of my publications.
2019-ievobio
247.782
Special topic in computational biology
accumulate
code for calling mutatons from MA lines
accumulate-demonstration
Code used to demonstrate the use of accuMUlate
accumulate-tools
Scripts to help prepare files for accuMulate and process the results
bamtools
C++ API & command-line toolkit for working with BAM data
bedtools2
bedtools - the swiss army knife for genome arithmetic
biopython
My branch of Biopython - with support for Arlequin sequence files
biopython.github.io
Source of biopython.org website, migrated from MediaWiki
blasr
BLASR: The PacBio® long read aligner
computing-for-biologists
cyclicpeptidednds
denovogear
A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)
dfe
Fitting, simulating and generally exploring the distribution of fitness effects from MA studies
dwinter
dwinter.github.com
dwinter.info
Personal academic website
fl1_genome_scripts
Scripts and analysis utils to support a manuscript describing the Fl1 genome
freqseq
Simple tool for calculating frequencies of "read alleles" in BAM file
fulltext
An R api to search across and get full text for open access journals
funannotate
Fungal genome annotation scripts
fungal-foray
Working directory of of my attempt to visualize fungi-host relationships in NZ forests
galaxiids
Analysis of some fishy genomes
gene2product
Curated list of gene names and product descriptions that pass NCBI genome submission rules.
genome_factory
scripts and recipies for working on Epichloe genomes
gsi
gsi_simulations
Simulations for a manuscript describing the statistical properties of the genealogical sorting index
hyliter
R package to connect HyLiTE output to the DeSeq2 differential gene expression software
kakapo_aspergillosis
Working directory for analysis of kākāpō _Aspergillus_ isolates
kgd
Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
