Comments (3)
Just to chime in, your middle-ground solution seems great. I definitely understand your intent to keep the package size small and avoid heavy network use. Having the option to download it from an http server solves it.
I also think it's a great idea to document how operations can be done either locally or remotely. It makes another good selling point for the package.
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Yea, I agree that this would be very valuable for users.
I think one of the primary questions I've had is whether to a) package a full vector / raster dataset for distribution with elapid
(which would increase the package size by several mb) or whether to post some data to an http server to demonstrate the ability to read / work with web-hosted data (which requires heavy network use if making repeated web read requests).
Perhaps the middle ground is to do something like the following:
- host a vector / raster dataset via http
- write a convenience function to download it and work with these data locally
- package a vector dataset that has been annotated with the coincident raster values
This would mean that running some of the full raster/vector operations could be done locally or remotely based on whether a user chooses to download the data. Or, the packaged version could be loaded easily and several spatially-explicit modeling tasks can be performed off-the-bat without needing to do the rote data prep steps.
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The reason you're getting CRS errors with the existing bradypus
data is that, as packaged by maxnet
, the underlying data had no geographic data. It was just tabular. Maxent doesn't care because it's not spatial, but we care because, you know.
I'm pretty sure Elith et al. or others have published the full bradypus
data somewhere and I'll see if I can reconcile the location data with the aspatial data.
Regardless, getting a spatially-explicit example dataset is a high priority and we'll get there one way or another.
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Related Issues (20)
- pseudoabsence_from_bias_file not properly accounting for bias HOT 1
- Remove old docker references, superfluous conda routines from Makefile
- Remove docs/pre-commit dependencies from environment.yml
- Create conda skeleton to deploy package via GH Actions HOT 2
- Testing CI on all PRs
- Set up CI workflow dependencies
- `model.fit()` should clear state prior to running
- Handle 2d `y` variables
- [JOSS review]: Sample data missing at installation HOT 1
- [JOSS review]: unexpected keyword argument with feature transformations HOT 1
- [JOSS review]: unexpected keyword argument in envelope suitability HOT 1
- `nan` / `-inf` from computing hinge features across uniform covariate values
- add `quiet` option to silence tqdm
- handle dropped NA values when annotating a `GeoDataFrame`
- Citing elapid library HOT 3
- [JOSS review] Cannot determine CRS in Maxent vignette HOT 3
- package install challenges from `conda-forge` HOT 6
- Support partial dependence plots and feature importance scores
- module 'elapid' has no attribute
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