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amphx_ontology

Home of the Amphioxus Development and Anatomy Ontology (AMPHX)

annotare-validator

A validation script to ensure Annotare are informed of any important term changes.

biomedbridges

Contains code developed by the SPOT team at EBI as part of the BioMedBridges Project

biosamples-analysis

Contains python scripts and cypher to read BioSamples info from Solr, store in Neo4J database

biosamples-data-curation

A repository containing scripts/ideas/documents for semi-automated cleanup of the EBI Biosamples data.

biosamples-facet-concurrence

biosolr

A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"

blazegraph-docker

Docker image for running a Blazegraph server

bubastis

Bubastis is an ontology diff tool

cell_finder

clyh_ontology

Home of the Clytia hemisphaerica Development and Anatomy Ontology (CLYH)

cmpo

Cellular Microscopy Phenotype Ontology

cmpo-web-ols

web pages for the CMPO website

covoc

Application ontology for the description of coronavirus data

cttvassociations

diachron_archive

diachron_change_detection

Maven Project with services which correspond on the Change Detection and Validation/Repair Modules

diachron_ols

duo

Ontology for consent codes and data use requirements

ebi-framework-flex

The EMBL-EBI Visual Framework for websites and services.

efo

Github repo for the Experimental Factor Ontology (EFO)

efo-ukb-mappings

efo-website

Source code for the EFO website at http://www.ebi.ac.uk/efo

ejp-ontology

An ontological model for describing resources for Rare Diseases catalogs including registries, biobanks, research infrastructures, genomes-phenome repositories, method standards, etc.

ejprarediseases.github.io

The webpage describing all the metadata for the ejp rare diseases virtual platform for discovering catalogs/registries/biobanks resources

ejprd-metadata-models

This is for publishing EJP-RD registries , Biobanks and Catalogs metadata, through the extraction, conversion, RDF schema and validating the RDF data using the ShExC

eqtl-sumstats-service

eQTL Summary Statistics Service

eshg-2024-workshop

Workshop material for the European Human Genetics Conference 2024

ga4gh-biosamples

A test implementation for development of the GA4GH API over BioSamples.

goci

GWAS Catalog Ontology and Curation Infrastructure