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bids-bep016

BEP016: diffusion derivatives

bids-on-scinet

A collection of my notes about how to run BIDS apps on the SciNet Niagara cluster

bids-specification

binder-python-test

testing python binder building

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

ciftify_gradient_align

grandient based cifti alignment (BCB)

ciftify_paper

Scripts and notes relating to analyses run as part of the ciftify paper

coco2019_giraffe

test giraffe repo

compare-surf-tools

compare_surf_tools

A BrainHack Project to compare thickness outputs from different pipelines run on ABIDEI

compucool-may-2018

develenv_ciftify_docker

builds a docker for a ciftify devel environment

develenv_dmriprep_docker

a dockerfile that builds the devel env for dmriprep

dmri-microstructure

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

docpics

A repo of pictures to put in my wiki

ds000201_preproc

preprocessing and feature extraction for ds0000201

epitome

a platform for mri analysis pipeline development

example-party

A code, examples, and teaching materials for single scenerio to teach in all of our lessons

example-python-repo

An example repo for the KCNI School Day 1. Shows some python reproducible environment tricks.

falff_cifti

This includes code to calculates fALFF.

global2017

webpage for Brainhack Global 2017

hcp_extras

A bunch of scripts I've been writing to get hcp built tools to work on none hcp data

icarus

A simple tool for viewing and scoring FSL MELODIC ICA/FIX results

kcni-school-envs

A collection of docker environments for the KCNI Summer School

kcni-school-lessons

A collection of code and lessons for the KCNI Summer School

kcni-summer-school-day-3

KCNI Summer School Day 3, by Keon Arbabi

kcnischool.org

kcnischool2022-projectweek

lrn2compute

Scientific Computing Workshop Series, Nov 23-27, 2015