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3d-unet

Tensorflow, Pytorch, and Chainer implementations of 3D UNet

3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

captum

Model interpretability and understanding for PyTorch

edraizen.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

expvae

Visually Explainable VAE

histonedb

Browse all histone sequences by histone varaints

hmmpileup

Run HMMER and UCSC-SAM model mixtures, saving the results into a pile up

hsp_tiler

A python script to mend frameshift mutions from blast annotation

hydra

Hydra is a framework for elegantly configuring complex applications

icn3d

Client-side structure viewer

intermine

A powerful open source data warehouse system

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

keras_demo

lajc-wage-theft-data

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

masif-dockerfile

minkowskiengine

Minkowski Engine is an auto-diff neural network library for high-dimensional sparse tensors

modern-resume-theme

A modern static resume template and theme. Powered by Jekyll and GitHub pages.

old_personal_site

Personal Site and CV

pdb-tools

Set of utility scripts to manipulate PDB files

plmc

Undirected graphical models of sequence families by pseudolikelihood

prodigy

Repository containing various scripts to predict the binding affinity of protein-protein complexes from structure

pyframe

Ab initio frameshift mutation correcter

pytorch-lrp

Basic LRP implementation in PyTorch

rfdiffusion

Code for running RFdiffusion

singularity

singularitytorch

sparseconvnet

Submanifold sparse convolutional networks

structure_visualization

1-, 2-, and 3-D visualizations of SNPs and Protein Interaction Data