Comments (2)
Hi Sean, we are looking into it. In a couple of tests in a standard Linux server I have seen a 25% performance gain (in real time compared to multithreaded MCL). However, the formats are not the same and I haven't been able to find the right params to reproduce the results of the original MCL (we have reached out to the authors and they are helping out). Furthermore, the compilation requires mpich. So we might add it as an option but relying on user's binaries to keep things simple, Bruno
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Related Issues (20)
- Invalid protein cluster files generated by get_homologues-est when .faa and .fna have genes in different order. HOT 4
- Error with FNA and FAA sequence order HOT 6
- File Output? HOT 3
- Pangenome question HOT 1
- Error: find_COGs HOT 6
- COGreadblast produce empty results HOT 2
- Question: Is there a way to identify which genomes correspond to core-genome sample numbers? HOT 10
- Unable to create venn intersection BDBH, COGS, OMCL HOT 14
- Removing input files: do I need re-run all the analysis? Or there's another way? HOT 2
- Error in Get_homologues analysis HOT 1
- Error in input genbank files HOT 1
- Could not solve for environment specs HOT 2
- Error while running: executeFORMATDB : cannot find input FASTA file HOT 2
- Issue with Input files not being detected by Get_homologues HOT 6
- maybe a bug in annotate_cluster.pl HOT 2
- Phylogenetic tree not showing strain name HOT 1
- Phylogeny Question HOT 1
- core genes list annotations HOT 3
- Generating ANI svg is broken HOT 3
- Problem generating alignment file while using annotate_cluster.pl HOT 5
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