re-run pipeline for compositional analyses using subset of genomes does not use previous data about get_homologues

[brunocontrerasmoreira]

Hi Stefano, unfortunately that cannot be done, as it only made sense to run DIAMOND against large sequence sets to take advantage of the speed gain. Therefore, each proteome is scanned twice: i) against itself and ii) against all others, and thus when using the -I flag the "others" set changes and needs to be recomputed, BRuno