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ei-corebioinformatics's Projects

annotf icon annotf

AnnotF - A functional Annotation pipeline

cpc2 icon cpc2

Verbatim Copy of CPC 2.0

crispranto icon crispranto

CRISPR off-target analysis (i.e. CRISPRs second language)

dtol_asm_hifi icon dtol_asm_hifi

Assembly (Hifi), Breaking (10X), Scaffolding (10X) and Polishing (10X) pipeline

eifunannot icon eifunannot

eifunannot - EI AHRD functional annotation pipeline

eirepeat icon eirepeat

eirepeat - EI Repeat Identification pipeline

go-patterns icon go-patterns

Curated list of Go design patterns, recipes and idioms

mikado icon mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

minos icon minos

The labyrinth king judges your gene models.

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

portcullis icon portcullis

Splice junction analysis and filtering from BAM files

qaa icon qaa

Quality Assurance for Assemblies

reat icon reat

Robust Eukaryotic Annotation Toolkit

skimseqqc icon skimseqqc

Snakemake pipeline for QC of low-coverage skim-sequencing of G&T seq data

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