eijynagai Goto Github PK

academicons

An icon font for academics

avocado

Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.

barrier

Open-source KVM software

biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

carscore

Centrality Analysis Ranking score

ce-neuronclusters

cellphonedb

chrvis

[Research Intern work] HiC Data Analysis Suite

course-collaboration-travel-plans

covid19_sc

Processing workflow for COVID-19 single cell data

cv

dotfiles

drompaplus

ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.

drosophila_dedifferentiation_nagai

eeisp

epimap-metadata-harmonization

IHEC metadata merging and cleanup

gget

gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

illuminati

scripts to automate illumina secondary analysis pipeline

interactive-3d-plotting-in-seurat-3.0.0

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

ipynb-lamanno2016

Notebook and examples related to La Manno and Gyllborg et al. 2016

juicebox

Visualization and analysis software for Hi-C data -

ki_ut

late

Imputation of single cell RNA-sequencing data with autoencoder

liger

R package for integrating and analyzing multiple single-cell datasets

mastering-ubuntu-server_third-edition

Mastering Ubuntu Server_Third Edition, published by Packt

nakatolab_rinkou

pdsnd_github

GitHub project (Project 3) repository for PDSND

phantompeakqualtools

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

python