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Name: Elias Salfati
Type: User
Bio: I am not a robot.
Name: Elias Salfati
Type: User
Bio: I am not a robot.
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
amplicon/smMIP mapping and analysis pipeline
amr_finder
This is a web-app and workflow for computationally screening PCR-based assays
List of computational resources for analyzing microbial sequencing data.
A curated list of nextflow based pipelines
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
GATK RNA-Seq Variant Calling in Nextflow
Detection of incorrectly labeled sequences across kingdoms
Ultra-fast Multi-threaded FASTQ Demultiplexing
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Goalign
GraftM - Rapid community profiles from metagenomes
INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite
Jekesa (Illuminate) is an automated bash pipeline for bacterial whole genome assembly and typing using Illumina paired-end sequencing data.
The second version of the Kraken taxonomic sequence classification system
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
MetaPORE – Chiu Laboratory, University of California, San Francisco
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
A microbial profiling framework for metagenomic analysis
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
Scripts to download genomes from the NCBI FTP servers
PACIFIC: A lightweight alignment-free deep-learning classifier of SARS-CoV-2 and co-infecting viral sequences
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.