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analysis-tools

Code for analyzing data saved by the Open Ephys GUI

analysispython

behavioralautomation

Codes developed for general use in arduino, mostly in automation of mazes and neuroscience behavior stuff.

buzcode

Code for internal lab sharing - polishing has started but is by no means complete

curbd

Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)

deeplabcut

Markerless tracking of user-defined features with deep learning

eliezyer.github.io

ember-osf-preprints

OSF Preprints: The open preprint repository network

fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

fritzing-app

Fritzing desktop application

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

gui

Software for electrophysiology data acquisition

kilosort

GPU code for spike sorting

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

kilosortwrapper

ks2wrapper

Code to wrap neuroscope xml information to use kilosort in the binary files

matlabscripts

Matlab Scripts for electrophysiological analysis

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

plugin-gui

Open Ephys GUI with plugin architecture

preprocess-pipeline

Code for preprocessing data in brito-sjulson lab

pynapple

PYthon Neural Analysis Package :pineapple:

reagent

A platform for Reasoning systems (Reinforcement Learning, Contextual Bandits, etc.)

rippledetector

SPWRs Detecor for real time purpose

ripplemodel

Matlab function to generate a simple ripple model

sharpwaveripples

spikesdecisionactions

Trying to implement Wilson's book code in python

tensortools

Fitting and visualizing tensor decompositions in Python

tstoolbox

A Matlab Toolbox to analyze neuronal data