Emily A. Aery Jones's Projects
MATLAB and IGOR scripts used to generate "Hippocampal GABAergic Interneurons Bidirectionally Modulate Signatures of Internal and External Drive"
Histology processing
Extract a list of authors who have published preprints containing a user-defined keyword
The bioinformatics/coding bootcamp session taught to incoming UCSF Biomedical Sciences graduate students.
Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels data.
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
Build files for chronic, recoverable Neuropixels implants in mice
Modules for processing extracellular electrophysiology data from Neuropixels probes
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Simple fabric mask design for reducing viral spread
A workshop to teach young scientists how to dissect a scientific paper
MATLAB and Python scripts used to generate "Early Hippocampal Sharp-Wave Ripple Deficits Predict Later Learning and Memory Impairments in an Alzheimer’s Disease Mouse Model"
Team project for Neuromatch Academy 2020 applying an HMM to data from Steinmetz et al, 2019 to elucidate latent states that help explain task performance
Utilities for loading SpikeGLX data in xarray format.
A workshop on evolution for high school students
Build files and scripts for an automated delayed (non)match to direction task