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eQTL Catalogue's Projects

colocalisation icon colocalisation

This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs

eqtl-catalogue-website icon eqtl-catalogue-website

Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)

genimpute icon genimpute

Portable genotype imputation pipeline used by the eQTL Catalogue

genotype_qc icon genotype_qc

Workflows for performing genotype QC before and after imputation

qcnorm icon qcnorm

This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes

qtl_norm_qc icon qtl_norm_qc

This repo contains necessary scripts to run Quality Control (QC) and Normalisation on phenotype count matrices generated by rnaseq pipeline.

qtlmap icon qtlmap

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

rnaseq icon rnaseq

RNA-seq quantification pipeline used by the eQTL Catalogue

susie-workflow icon susie-workflow

Nextflow workflow for applying SuSiE finemapping model to a large number of molecular QTLs

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