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anaties

anaties (analysis utilities): utilities for analysis of data

animatplot

A python package for animating plots build on matplotlib.

api

Resources for the Bungie.Net API

arduino-udev

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

ccn-template

Template repository for CCN software projects

ccn_caiman_mesmerize_workshop_2023

Repo for CCN workshop on caiman and mesmerize in January 2023

corona-coders

Learn to code in Python during the pandemic. For kids age 9+.

covid-mapping

Using Python to visualize coronavirus data

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

deep_sort

Simple Online Realtime Tracking with a Deep Association Metric

deep_sort_yolov3

Real-time Multi-person tracker using YOLO v3 and deep_sort with tensorflow

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

dj-filepaths-example

Simple example of how to use filepaths in datajoint

earlybird

To-do tree application.

examples

Python script examples adapted for PySide.

ezsaver

Save and load variables in Python quickly, without thinking about it too much

fastplotlib

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

fpp3-python-readalong

Python-centered read-along of Forecasting: Principles and Practice

gigadetector

Object detection pipeline for images much too large to fit in GPU

git_learn

Tutorial on learning git/github essentials

glumpy-basics

Doing the glumpy tutorial

ica

Independent component analysis

im-crop

Crop out and save pieces of larger images using opencv

image_sandbox

Images to use in colab notebooks temporarily

mandelviews

View mandelbrot sets, example repo implementing guidelines at CCN template

mesmerize

Platform for Calcium Imaging analysis

mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

mesmerize_setup

Getting started with Mesmerize on Windows.

movie-crop

Crop movies using Python