Name: Young
Type: User
Company: Utah Public Health Laboratory
Bio: Bioinformatician in public health
Location: Salt Lake City, UT
Blog: https://uphl.utah.gov/
I work at the Utah Public Health Laboratory as a Bioinformatician.
I mostly work in the linux (centos and ubuntu) command line (shell).
I have written a few packages in python, but mostly I cobble bioinformatic tools together into nextflow workflows.
I'd like to learn rust, but haven't found the time.
I'm almost always open for collaboration.
aci
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
bioconda-recipes
Conda recipes for the bioconda channel.
circulocov
Estimates the coverage of nanopore or illumina reads on a draft assembly
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
erinyoung
ga_testing
Just playing around with GA
heatcluster
Creates a heat map with an accompanying cluster map for a SNP matrix
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multiqc_testdata
Test data for MultiQC. See https://github.com/ewels/MultiQC
nanoamr
TBD : Getting AMR genes from nanopore reads
phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
random
Random things I don't want to forget
roundabout
Finding regions of similarity between plasmids
sars-cov-2-workflow-comparison
A collection of workflows for analyzing the SARS-CoV-2 genome.
soundtracks
A list of video game soundtracks that are great for work
vectordetective
Nextflow workflow for identification of Blood Source in Mosquito Bloodmeal
workshop
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
