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asmworkshop

Functional Metagenomic Selections for Antibiotic Resistance Gene Profiling at ASM Microbe '17

canu

A single molecule sequence assembler for genomes large and small.

ciidsketch

A Processing sketch made in 2013 to visualize functional metagenomic data

daisypi

DaisyPi Home Automation project based on Raspberry Pi / envinronmental ( indoor ) data logging

defume

deFUME is an easy-to-use web-server for trimming, assembly and functional annotation of Sanger sequencing data derived from functional selection experiments. As input the user simply provides raw Sanger sequencing chromatograms or pre-assembled sequencing projects. Upon submission the web-server processes the information by integrating multiple analysis steps into one single workflow: read trimming, assembly of reads into contigs, open reading frame prediction, BLAST and enrichment with available metadata. As output, deFUME delivers a comprehensive sequence-overview that include functional annotations and sequence statistics.

django-neomodel

Neomodel plugin for Django

dokku-neo4j-1

Dokku Neo4j unofficial plugin

gohugo-theme-ananke

Ananke: A theme for Hugo Sites

hclust-fasta

Blast all-against-all and Hierachical clustering of protein sequences in FASTA

lewagon-weekend-workshop

matlab-git

A simple function that lets you use GIT from matlab using standard GIT commands

nanopolish

Signal-level algorithms for MinION data

odity-growth-e-coli

This is the full data analysis accompanying the pre-print 'Quantifying live bacterial densities using non-invasive optical measurements of E. coli' on bioRxiv.

papernetwork

Collect and analyze scientific literature from Semantic Scholar

porecamp

Markdown bioinformatics training materials for PoreCamp

porecamp.github.io

Jekyll Starter Theme - Minimial

porefume

Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing

porefume_paper

Provides Jupyter notebooks to analyse the poreFUME output

prettypandas

A Pandas Styler class for making beautiful tables

roary

Rapid large-scale prokaryote pan genome analysis