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Hi! Thanks for your message.
hAMRoaster v2 requires a sample column that wasn't previously required for hAMRoaster v1. I've added the column now to the data file on github here. The data was simulated such that all clinical isolates are in one sample, so the "Sample" column for this dataset only has one value - one. This column is more useful for simulated data / input data with multiple samples, such as the low resistance dataset referenced in the prprint.
Let me know if you have any additional issues. Closing for now as the added column should solve the issue.
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