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bioconda-recipes

Conda recipes for the bioconda channel.

constractive

constrActive estimator can learn how to build instances that belong to a concept defined via a set of examples or that are most informative for a classifier that has to learn about the concept.

cppeden

Explicit Decomposition with Neighborhoods cpp version

deeprna

Application to predict RNA structures from sequences

eden

Explicit Decomposition with Neighborhoods python version

eden_chem

Chemoinformatics support for EDeN

eden_examples

IPython notebooks describing the use of the EDeN framework

eden_extra

Miscellanea support for EDeN

eden_prot

Proteomics support for EDeN

eden_rna

RNA bionformatics support for EDeN

edenseq

ego

Explicit Graph cOmponent feature constructor

graphembed

Compute a 2D embedding of a data matrix given supervised class information.

graphfinder

Identification of functional non coding RNA based on comparative analysis using the EDeN framework

graphlearn

Learn how to construct graphs given representative examples

graphlearn_examples

IPython notebooks with example usage for the graphlearn library

graphoptimizer

pymotif

Python wrappers in scikit-learn style for popular and experimental sequence motif algorithms.

rase-rna-structural-stability-estimator

RaSE - Rna structurAl Stability Estimator

rnasynth

RNAsynth allows the automatic identification of constraints to characterize a set of RNA sequences. These constraints can be used by AntRNA to finally synthesize compatible sequences.

smod

SequenceMotifDecomposer (SMoD) is a motif finder algorithm.

targetdist

Plot distribution over hierarchical sets of genomic targets.