Comments (32)
As @matse004 said, using pystan==2.17.1.0 rather than 2.18 works for me!
Do as bellow:
sudo pip uninstall pystan
sudo pip install pystan==2.17.1.0
sudo pip install fbprophet
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The fbprophet package requires pystan, which requires Cython. Try installing Cython with
pip install Cython
This should fix the issue.
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I had the same issue and I could make it work that way:
git clone --recursive https://github.com/stan-dev/pystan.git
cd pystan
python setup.py install
pip install fbprophet
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I have the same issue. I have tried all the mentioned fixes including downgrading pystan from 2.18 to 2.17.1.0 but still, it gives this error.
error: command '/usr/bin/clang' failed with exit status 1
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Actually, I just got it working. From the FB Prophet GitHub, they acknowledge that the pystan 3.0.0 version broke fbprophet (#1856). The team is currently working on a new version and should publish soon. In the meantime, i had to do a pip uninstall pystan
to remove 3.0.0 and then install using pip install pystan~=2.14
to install an older version. It seems the newer pystan 3.0.0 calls their module stan
instead of pystan
, which was breaking a few things. There were probably more changes to the updated pystan
rewrite.
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Run into the same issue on MacOS ElCapitan (10.11.6). Nothing worked for me except for manually downgrading pystan package from 2.18 to 2.17.1.0.
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I just want to chip in by saying that @anshul-tak's solution worked for me as well. Thanks for that, @anshul-tak.
For what it's worth, I use env CC=$(which gcc-9) CXX=$(which g++-9) pip install fbprophet
which (no pun intended) is slightly more sustainable should the version of gcc change (currently it's at 9.2.0_3).
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Installing via Conda fixed all problems for me
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Another solution that worked for me is force pip to use homebrew GCC compiler instead of CLANG
- After installing homebrew
env CXX=/usr/local/Cellar/gcc/9.2.0/bin/g++-9 CC=/usr/local/Cellar/gcc/9.2.0/bin/gcc-9 pip install fbprophet==0.4.post2
or Add env variable in your bash rc file.
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reinstalling pystan on macOS Big Sur didn't help me!
I properly installed fbprophet using pip after running the following:
sudo rm -rf /Library/Developer/CommandLineTools
xcode-select --install
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Hey @gregwalla, I'm also on Big sure, 11.2.1 at this point. I tried normal pip install, conda install, nothing worked, until I followed the advice of @BruceBinBoxing and downgraded pystan. This worked. For a mac I don't think we need to sudo, but it also didn't hurt, I used it verbatum:
sudo pip uninstall pystan
sudo pip install pystan==2.17.1.0
sudo pip install fbprophet
Thanks a lot! I use mac M1 with Big Sur. I tried all kinds of methods and all failed. But I used your method and it succeed. Thanks!
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I'm going to add my two cents, if any one is still having problems make sure you update your Xcode using:
xcode-select --install
This was my lifesaver along with making sure pystan
is installed BEFORE you install fbprophet
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My environment:
OSX : Big Sur 11.6
python : python:3.7-slim
$ pip install pystan==2.19
$ pip install fbprophet
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xcode-select --install
reinstalling pystan on macOS Big Sur didn't help me!
I properly installed fbprophet using pip after running the following:sudo rm -rf /Library/Developer/CommandLineTools xcode-select --install
Thanks @mahanh this help to solve the issue on my side
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Actually, I just got it working. From the FB Prophet GitHub, they acknowledge that the pystan 3.0.0 version broke fbprophet (#1856). The team is currently working on a new version and should publish soon. In the meantime, i had to do a
pip uninstall pystan
to remove 3.0.0 and then install usingpip install pystan~=2.14
to install an older version. It seems the newer pystan 3.0.0 calls their modulestan
instead ofpystan
, which was breaking a few things. There were probably more changes to the updatedpystan
rewrite.
Thank you @plank3ffect! My error was 'unable to find module pystan', even though it was installed.
This helped fix the issue.
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the problem exists when Cython already installed
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This question suggests that maybe your XCode is outdated. Can you check cc --version
. Here's mine:
sjt-mbp1:examples sjt$ cc --version
Apple LLVM version 8.0.0 (clang-800.0.42.1)
Target: x86_64-apple-darwin16.4.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
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it is ok now when i installed the xcode,thanks to seanjtaylor
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Failed install fbprophet.
sudo pip3.5 install fbprophet
It stocks in Downloading fbprophet-0.1.1.tar.gz
I already installed Xcode and Cython.
Apple LLVM version 8.1.0 (clang-802.0.42)
Target: x86_64-apple-darwin16.7.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
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FWIW I am encountering same issue as @stories2
My cc --version
:
Apple LLVM version 8.1.0 (clang-802.0.42)
Target: x86_64-apple-darwin16.7.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
Update: installing via conda
works for me
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@thomzi12 In my case, it just took soooooooooooo long time.
Drink coffee. The time will solve your problem :)
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Same issue I met when I install pystan (2.18.0.0) & fbprophet (0.3.post2) on macOS(10.13.6)
Issue disappeared after downgrading pystan from 2.18 to 2.17.1.0 as matse004's suggestion.
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Installing via Conda fixed all problems for me
This is the only thing that worked for me in the whole thread.
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export CC=$(which gcc)
export CXX=$(which g++)
pip install fbprophet
And my error is: error: command 'clang' failed with exit status 1
This works, thanks @anshul-tak
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Hi, I have the same problems in installing Prophet. Irrespective of the two exports above, I still get the following error:
Building wheel for fbprophet (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Users/andreamoro/.pyenv/versions/3.8.6/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"'; __file__='"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-wheel-jmh6cp00
cwd: /private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/
Complete output (10 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/fbprophet
creating build/lib/fbprophet/stan_model
Importing plotly failed. Interactive plots will not work.
INFO:pystan:COMPILING THE C++ CODE FOR MODEL anon_model_dfdaf2b8ece8a02eb11f050ec701c0ec NOW.
error: command '/usr/bin/gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for fbprophet
Running setup.py clean for fbprophet
Failed to build fbprophet
Installing collected packages: fbprophet
Running setup.py install for fbprophet ... error
ERROR: Command errored out with exit status 1:
command: /Users/andreamoro/.pyenv/versions/3.8.6/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"'; __file__='"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-record-s04b7vvw/install-record.txt --single-version-externally-managed --compile --install-headers /Users/andreamoro/.pyenv/versions/3.8.6/include/python3.8/fbprophet
cwd: /private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/
Complete output (10 lines):
running install
running build
running build_py
creating build
creating build/lib
creating build/lib/fbprophet
creating build/lib/fbprophet/stan_model
Importing plotly failed. Interactive plots will not work.
INFO:pystan:COMPILING THE C++ CODE FOR MODEL anon_model_dfdaf2b8ece8a02eb11f050ec701c0ec NOW.
error: command '/usr/bin/gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/andreamoro/.pyenv/versions/3.8.6/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"'; __file__='"'"'/private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-install-dpr3g5ph/fbprophet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/c_/ll8fp86d39d2qthh_cbg8vlc0000gp/T/pip-record-s04b7vvw/install-record.txt --single-version-externally-managed --compile --install-headers /Users/andreamoro/.pyenv/versions/3.8.6/include/python3.8/fbprophet Check the logs for full command output.
I'm not using Anaconda or anything like it, Xcode is installed.
As far as I can understand from the above, it seems the error code is due to some writing permission, which as a matter of fact are correct because on this working laptop IT prevents me to write into the private folder.
I had a look at the settings, but couldn't spot anything that allow me to specify a different folder.
Has anybody had a similar issue?
Thanks
Andrea
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@andreamoro facing the same problem as you mentioned. Please update me if you find a solution
thanks
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It might me a problem with pystan, which relies on C++ libraries that are not found where expected. I'm trying to speak with a developer there. Are you able to run pyStan and a demo example with success on your end @vemuri-nath ?
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Same problem here , nothing seems to work. I am on MAC OS BIG SUR 11.1
Additional requirements :
- I use a venv for 'light weight' reproductibilty.
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Hey @gregwalla, I'm also on Big sure, 11.2.1 at this point. I tried normal pip install, conda install, nothing worked, until I followed the advice of @BruceBinBoxing and downgraded pystan. This worked. For a mac I don't think we need to sudo, but it also didn't hurt, I used it verbatum:
sudo pip uninstall pystan
sudo pip install pystan==2.17.1.0
sudo pip install fbprophet
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Could it be that we are using pyenv and virtualenv? Mine fails as well because it cannot find pystan, which I definitely installed. It is executing from a /private/ folder.....
File "/private/var/folders/km/1jh10x6x4l11w3bmxqrbgtp40000gn/T/pip-install-ppew3k63/fbprophet_263d1ca7a61543b0bfe1544fa2f11904/fbprophet/models.py", line 209, in build_model import pystan ModuleNotFoundError: No module named 'pystan'
Any ideas on how to specify the pystan from the virtualenv when installing fbprophet? Or am I off base?
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It seems this error still persists with pystan 3.2.0. Am I wrong?
I cannot install the library at all. Anybody else?
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when i tried installing fbprophet I've got the same error?
anyone know how to install it ?
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