Ye Wang's Projects
A curated list of awesome Bioinformatics libraries and software.
A collection of tools for daily bioinformatics
Detect cohort genomic concordance
GWA mapping with C. elegans
This repo records my coding notes
A book covering the fundamentals of data visualization.
The Guide to Computing in the Andersen Lab
Config files for my GitHub profile.
Ye blog
poultry variant calling
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Script used to build the environment on Macos using pyenv and conda
Conda environments
A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
A DSL for data-driven computational pipelines
Nextflow pipeline for calling NILs and RILs
Practice of bash
RNAseq analysis notes from Tommy Tang
RNA-seq pipeline for quick quantification of known genes
STR variant calling pipeline
Use seqtk to subsample the RNA-seq data
A nextflow pipeline for whole genome variant calling using gatk