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ace-pyrotag-pipeline

Ace Pyrotag Pipeline

amplicopyrighter

CopyRighter

artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

bio-phylo

Phyloinformatic analysis using Perl

covr

Test coverage reports for R

fastq-tools

Small utilities for working with fastq sequence files.

file-sharednfslock

File::SharedNFSLock Perl module

heatmapper

Heatmapper - Make heatmaps of biological communities

hitman

HIgh Throughput Microbial ANalysis

io-pager

IO::Pager - Select a pager and pipe text to it if destination is a TTY

ipc-run

Clone of http://svn.ali.as/cpan/trunk/IPC-Run

lintr

Static Code Analysis for R

math--gsl

Perl interface to the GNU Scientific Library

math-random-mt-perl

Pure Perl version of the Math::Random::MT module to generate random numbers using the Mersenne-Twister algorithm

merge_gg_silva

Combine the goodness of the Greengenes and Silva microbial databases

metavelvet

An extension of Velvet assembler to de novo metagenome assembly from short sequence reads

mikezbioscripts

A collection of scripts that I like to use, they work (kind of) so use them at your own peril...

minced

Mining CRISPRs in Environmental Datasets

module-install-podfromeuclid

Module::Install extension to make POD from Getopt::Euclid-based scripts

module-install-readmefrompod

(perl) A Module::Install extension to automatically convert POD to a README

mpandroidchart_moveviewtox

Testing moveViewToX()

nesoni

High throughput sequencing analysis tools

opp

Other People's Pipeline

osmand

osmand

parallel-iterator

Release history of Parallel-Iterator

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

pod-simple

Framework for Parsing and Formatting POD

pod-simple-select

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

r-box

R package for Sublime Text 3