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2019-ncov-t-cell-vaccine-candidates

Source code and associated data files for reproducing the results of research article titled, "Preliminary identification of potential vaccine targets for the COVID-19 coronavirus (SARS-CoV-2) based on SARS-CoV immunological studies", published in Viruses journal. (Viruses 2020, 12(3), 254; https://doi.org/10.3390/v12030254)

accourse2019

Repository for course materials for the antigenic cartography and antibody landscapes course 2019

bayesian-probabilistic-matrix-factorization

Bayesian Probabilistic Matrix Factorization

cas13-david-ma

Cas13 project for CCIA & Peter Mac

cas13target

Repository for the web application for identifying Cas13b guide RNA targets from DNA/RNA input sequence (https://cas13target.azurewebsites.net/).

cell2tcr

Inference of TCR motifs

complexheatmap

make complex heatmaps as well as self define annotation graphics

complexheatmap-reference

cov-crispr

covid-19-data

Data on COVID-19 confirmed cases, deaths, and tests • All countries • Updated daily by Our World in Data

data-flavi-t-cell-epitopes

RDS file containing dataframe object of T cell epitopes of flaviviruses.

deep-proteomics

deep_learning_examples

Examples of using deep learning in Bioinformatics

deeplearning-biology

A list of deep learning implementations in biology

delays

Trends in scientific publishing delays

docker_for_r_tutorial

How to add a Docker image to your R project to improve reproducibility

elements-of-style-reproducible-workflow-creation-maintenance-tutorial

gaussdca.matlab

Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - MATLAB version

ggplot2

An implementation of the Grammar of Graphics in R

gisaid-scrapper

Scrapping tool for GISAID data regarding SARS-CoV-2

gisaidr

Programmatically interact with the GISAID database.

gramm

Gramm is a powerful visualization toolbox which allows to quickly create complex, publication-quality figures in Matlab, and is inspired by R's ggplot2 library by Hadley Wickham. As a reference to this inspiration, gramm stands for GRAMmar of graphics for Matlab.

hcve1e2

Code from Hang on HCV E1 E2 analyses

hiv-gag-immunogens

This repository includes source code scripts for all the analysis and figures reported in Ahmed et al.’s “Sub-dominant principal components inform new vaccine targets for HIV Gag”. The source code for the analysis is contained in the “Analysis” folder, while the scripts for generating the figures are in the “Figures” folder.

interactive

Interactive Documents with R

intro-to-rnaseq-hpc-salmon

Melbourne Bioinformatics Workshop related to RNA-seq

intromlforlifescienceworkshop2022

keras_tensorflow_on_iris

A minimal tutorial on how to build a neural network classifier based on the iris data set using Keras/TensorFlow in R/RStudio

lineage-designation

Official place for proposals and details around monkeypox virus lineage designations

localblast

A short tutorial on how to run local BLAST.