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atrada

A R-package for parsing, analysing and visualising data from turbidity reduction assays.

bioconda-recipes

Conda recipes for the bioconda channel.

colours

A KTH-based colour palette and a script to show terminal colours.

comment.nvim

:brain: :muscle: // Smart and powerful comment plugin for neovim. Supports treesitter, dot repeat, left-right/up-down motions, hooks, and more

development-guidelines

Small repository, this one. Contains a single document (README.md) describing guidelines for the development of software within NBIS.

dotfiles

My personal collection of dotfiles.

fasterius.github.io

My personal website.

ggeom

A collection of small scripts for fetching and parsing metadata from the GEO and SRA.

mbit

Miscellaneous bioinformatic tools creating during my PhD studies, with everything from differential expression analysis of RNA-seq data to machine learning.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nbis-support-template

A minimalistic template for making and working with reproducible NBIS support projects.

nextflow-novice

A Carpentries style resource for teaching Nextflow for Reproducible Scientific Analyses.

nf-core-quarto-template

rna-vc

A Snakemake pipeline for variant calling and gene expression estimation of public RNA-seq data.

seqcat

A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.

simple-zoom.nvim

A simple plugin to add a Tmux-like zoom functionality to Neovim

singularity-in-docker

A small repository with instructions on how to build Singularity images inside a Docker container.

telekasten.nvim

A Neovim (lua) plugin for working with a markdown zettelkasten / wiki and mixing it with a journal, based on telescope.nvim

test-datasets

Test data to be used for automated testing with the nf-core pipelines

varclust

A Python package for clustering of single nucleotide variants from high-through seqencing data.

vim-lsp-settings

Auto configurations for Language Server for vim-lsp

workflows-nextflow

Workflow management with Nextflow and nf-core