Comments (1)
FelixKrueger
commented on August 27, 2024
For piece of mind I have altered the description slightly to:
--cutoff [threshold] The minimum number of times any methylation state (methylated or unmethylated) has to be seen for a nucleotide before its methylation percentage is reported. Default: 1.
from bismark.
Related Issues (20)
- Confusion on how coverage is estimated HOT 4
- Low unique alignment % HOT 8
- Analyzing spike in control performance HOT 2
- How to extract methylation levels according to bam file HOT 6
- Correcting low % methylated regions HOT 4
- help combining bismark pipeline with methylated UMIs HOT 8
- Expected unique alignment % HOT 2
- Parent process: Failed to build index HOT 3
- bismark runs to an error when I try to run it using nextflow HOT 4
- Differences in bismark convertion result HOT 1
- Bismark genome preparation issue HOT 3
- Use SRR files with .rar (ziped) format HOT 1
- Dose it necessary to place reads in working directory? HOT 1
- Issue with Perl in filter_non_conversion HOT 4
- bismark for human genome HOT 3
- ambiguous results in .bam file HOT 3
- deduplicate_bismark problem HOT 4
- index of genome faulty or non-existant HOT 5
- Bismark2summary not working for output with hisat2 HOT 6
- directional and nondirectional HOT 6
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from bismark.