Comments (2)
Hi John,
thanks for your message, I will look into this as soon as I find the time. Best, Felix
from bismark.
I have now looked into this and you were absolutely right, something had crept in during the latest 'adjustment' of corner cases! I have now replaced greater than (>) with greater or equals (>=) which appears to do the job fine again, just like it was with version 0.15.0. (addressed in a831ce7)
I have also made a new release v0.16.2 (https://github.com/FelixKrueger/Bismark/releases) that fixes this bug and also adds a few more convenience features. Please let me know if you still encounter any odd situations with the new version.
Thanks again for spotting this, Best wishes, Felix
from bismark.
Related Issues (20)
- Confusion on how coverage is estimated HOT 4
- Low unique alignment % HOT 8
- Analyzing spike in control performance HOT 2
- How to extract methylation levels according to bam file HOT 6
- Correcting low % methylated regions HOT 4
- help combining bismark pipeline with methylated UMIs HOT 8
- Expected unique alignment % HOT 2
- Parent process: Failed to build index HOT 3
- bismark runs to an error when I try to run it using nextflow HOT 4
- Differences in bismark convertion result HOT 1
- Bismark genome preparation issue HOT 3
- Use SRR files with .rar (ziped) format HOT 1
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- Issue with Perl in filter_non_conversion HOT 4
- bismark for human genome HOT 3
- ambiguous results in .bam file HOT 3
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- Bismark2summary not working for output with hisat2 HOT 6
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